Presenilin family intramembrane aspartate protease in C222 space group
Organism: Methanoculleus marisnigri
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01080
PDB ID: 4HYG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 10
Sequence positions:
A: 10-30|35-64|72-94|101-119|214-233|274-292
B: 10-30|34-64|72-97|102-119
Tilt angles:
A - Segment: 10-30 - Tilt: 35.1°
A - Segment: 35-64 - Tilt: 30.2°
A - Segment: 72-94 - Tilt: 35.5°
A - Segment: 101-119 - Tilt: 14.8°
A - Segment: 214-233 - Tilt: 18.0°
A - Segment: 274-292 - Tilt: 35.6°
B - Segment: 10-30 - Tilt: 33.7°
B - Segment: 34-64 - Tilt: 38.5°
B - Segment: 72-97 - Tilt: 47.1°
B - Segment: 102-119 - Tilt: 23.6°
Structural assessment:
MAIDEN score = -99.2376
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]