Presenilin family intramembrane aspartate protease in C222 space group
Organism: Methanoculleus marisnigri
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01080
PDB ID: 4HYG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 17
Sequence positions:
A: 10-24|38-58|65-84|99-113|120-137|141-155|177-193|197-211
B: 252-266|284-302|309-330|339-355|363-379|388-402|418-433|448-461|473-488
Tilt angles:
A - Segment: 10-24 - Tilt: 17.6°
A - Segment: 38-58 - Tilt: 56.2°
A - Segment: 65-84 - Tilt: 41.9°
A - Segment: 99-113 - Tilt: 17.5°
A - Segment: 120-137 - Tilt: 43.7°
A - Segment: 141-155 - Tilt: 26.6°
A - Segment: 177-193 - Tilt: 40.5°
A - Segment: 197-211 - Tilt: 36.2°
B - Segment: 252-266 - Tilt: 28.2°
B - Segment: 284-302 - Tilt: 43.8°
B - Segment: 309-330 - Tilt: 53.0°
B - Segment: 339-355 - Tilt: 33.7°
B - Segment: 363-379 - Tilt: 33.9°
B - Segment: 388-402 - Tilt: 28.4°
B - Segment: 418-433 - Tilt: 25.8°
B - Segment: 448-461 - Tilt: 22.0°
B - Segment: 473-488 - Tilt: 39.7°
Structural assessment:
MAIDEN score = -102.9776
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]