Peptide transporter POT
Organism: Geobacillus kaustophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4IKV
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.0 Å
Number of TM segments = 14
Sequence positions:
A: 29-46|66-83|97-113|119-135|162-179|183-200|230-245|257-276|291-316|333-349|367-383|398-416|437-452|468-484
Tilt angles:
A - Segment: 29-46 - Tilt: 20.6°
A - Segment: 66-83 - Tilt: 26.8°
A - Segment: 97-113 - Tilt: 20.5°
A - Segment: 119-135 - Tilt: 25.7°
A - Segment: 162-179 - Tilt: 23.7°
A - Segment: 183-200 - Tilt: 17.6°
A - Segment: 230-245 - Tilt: 13.0°
A - Segment: 257-276 - Tilt: 30.9°
A - Segment: 291-316 - Tilt: 49.2°
A - Segment: 333-349 - Tilt: 29.8°
A - Segment: 367-383 - Tilt: 31.2°
A - Segment: 398-416 - Tilt: 35.5°
A - Segment: 437-452 - Tilt: 6.4°
A - Segment: 468-484 - Tilt: 20.3°
Structural assessment:
MAIDEN score = -83.5070
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]