TrkH/TrkA potassium transport complex
Organism: Vibrio parahaemolyticus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02386
PDB ID: 4J9U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.0 Å
Number of TM segments = 20
Sequence positions:
A: 7-26|38-56|68-84|126-142|163-180|215-231|253-270|312-340|378-395|433-457
B: 468-488|500-518|529-546|588-604|625-642|677-693|715-732|774-802|840-857|895-919
Tilt angles:
A - Segment: 7-26 - Tilt: 46.2°
A - Segment: 38-56 - Tilt: 27.4°
A - Segment: 68-84 - Tilt: 27.6°
A - Segment: 126-142 - Tilt: 25.0°
A - Segment: 163-180 - Tilt: 33.3°
A - Segment: 215-231 - Tilt: 27.9°
A - Segment: 253-270 - Tilt: 29.5°
A - Segment: 312-340 - Tilt: 10.7°
A - Segment: 378-395 - Tilt: 25.3°
A - Segment: 433-457 - Tilt: 11.5°
B - Segment: 468-488 - Tilt: 43.7°
B - Segment: 500-518 - Tilt: 27.0°
B - Segment: 529-546 - Tilt: 27.7°
B - Segment: 588-604 - Tilt: 24.3°
B - Segment: 625-642 - Tilt: 33.0°
B - Segment: 677-693 - Tilt: 27.8°
B - Segment: 715-732 - Tilt: 30.3°
B - Segment: 774-802 - Tilt: 11.4°
B - Segment: 840-857 - Tilt: 25.0°
B - Segment: 895-919 - Tilt: 11.0°
Structural assessment:
MAIDEN score = -79.5361
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]