Partially occluded inward open conformation of the xylose transporter XylE from E. coli
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00083
PDB ID: 4JA3
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 12
Sequence positions:
A: 12-26|54-68|80-95|124-137|163-178|194-207|261-283|289-304|321-335|345-360|375-390|406-422
Tilt angles:
A - Segment: 12-26 - Tilt: 22.7°
A - Segment: 54-68 - Tilt: 34.2°
A - Segment: 80-95 - Tilt: 23.7°
A - Segment: 124-137 - Tilt: 23.5°
A - Segment: 163-178 - Tilt: 31.3°
A - Segment: 194-207 - Tilt: 30.2°
A - Segment: 261-283 - Tilt: 56.9°
A - Segment: 289-304 - Tilt: 25.6°
A - Segment: 321-335 - Tilt: 26.8°
A - Segment: 345-360 - Tilt: 32.8°
A - Segment: 375-390 - Tilt: 32.3°
A - Segment: 406-422 - Tilt: 40.1°
Structural assessment:
MAIDEN score = -21.2178
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]