P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain
Organism: Mus musculus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00664
PDB ID: 4KSD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.8 Å
Number of TM segments = 12
Sequence positions:
A: 3-33|86-107|147-169|178-196|259-277|297-320|619-639|662-681|738-758|765-789|834-859|883-902
Tilt angles:
A - Segment: 3-33 - Tilt: 38.1°
A - Segment: 86-107 - Tilt: 35.5°
A - Segment: 147-169 - Tilt: 36.8°
A - Segment: 178-196 - Tilt: 12.6°
A - Segment: 259-277 - Tilt: 13.6°
A - Segment: 297-320 - Tilt: 35.8°
A - Segment: 619-639 - Tilt: 30.5°
A - Segment: 662-681 - Tilt: 12.2°
A - Segment: 738-758 - Tilt: 21.6°
A - Segment: 765-789 - Tilt: 44.6°
A - Segment: 834-859 - Tilt: 43.3°
A - Segment: 883-902 - Tilt: 14.9°
Structural assessment:
MAIDEN score = -61.6320
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]