Substrate-free glutamate transporter homologue from Thermococcus kodakarensis
Organism: Pyrococcus kodakaraensis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00375
PDB ID: 4KY0
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.5 Å
Number of TM segments = 21
Sequence positions:
A: 17-35|37-62|87-111|206-224|231-252|305-326|393-412
C: 16-34|37-65|84-109|129-160|203-224|231-253|304-324|393-412
B: 87-111|130-159|206-227|230-252|305-326|392-412
Tilt angles:
A - Segment: 17-35 - Tilt: 15.3°
A - Segment: 37-62 - Tilt: 49.4°
A - Segment: 87-111 - Tilt: 35.4°
A - Segment: 206-224 - Tilt: 31.0°
A - Segment: 231-252 - Tilt: 32.7°
A - Segment: 305-326 - Tilt: 29.5°
A - Segment: 393-412 - Tilt: 29.8°
C - Segment: 16-34 - Tilt: 10.6°
C - Segment: 37-65 - Tilt: 51.7°
C - Segment: 84-109 - Tilt: 46.7°
C - Segment: 129-160 - Tilt: 31.4°
C - Segment: 203-224 - Tilt: 30.6°
C - Segment: 231-253 - Tilt: 27.2°
C - Segment: 304-324 - Tilt: 28.5°
C - Segment: 393-412 - Tilt: 31.1°
B - Segment: 87-111 - Tilt: 38.9°
B - Segment: 130-159 - Tilt: 30.4°
B - Segment: 206-227 - Tilt: 38.4°
B - Segment: 230-252 - Tilt: 31.1°
B - Segment: 305-326 - Tilt: 30.9°
B - Segment: 392-412 - Tilt: 30.7°
Structural assessment:
MAIDEN score = -130.0563
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]