Substrate-free glutamate transporter homologue from Thermococcus kodakarensis
Organism: Pyrococcus kodakaraensis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00375
PDB ID: 4KY0
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.2 Å
Number of TM segments = 24
Sequence positions:
A: 8-27|29-56|76-101|118-145|189-210|217-238|290-309|379-398
C: 837-855|857-882|904-929|949-979|1023-1044|1051-1072|1124-1144|1213-1232
B: 424-442|444-471|491-516|530-559|603-624|631-652|704-724|793-812
Tilt angles:
A - Segment: 8-27 - Tilt: 16.4°
A - Segment: 29-56 - Tilt: 50.5°
A - Segment: 76-101 - Tilt: 46.7°
A - Segment: 118-145 - Tilt: 34.0°
A - Segment: 189-210 - Tilt: 30.1°
A - Segment: 217-238 - Tilt: 32.8°
A - Segment: 290-309 - Tilt: 34.6°
A - Segment: 379-398 - Tilt: 30.6°
C - Segment: 837-855 - Tilt: 17.8°
C - Segment: 857-882 - Tilt: 50.3°
C - Segment: 904-929 - Tilt: 47.9°
C - Segment: 949-979 - Tilt: 33.6°
C - Segment: 1023-1044 - Tilt: 31.7°
C - Segment: 1051-1072 - Tilt: 32.5°
C - Segment: 1124-1144 - Tilt: 30.1°
C - Segment: 1213-1232 - Tilt: 30.4°
B - Segment: 424-442 - Tilt: 17.2°
B - Segment: 444-471 - Tilt: 51.0°
B - Segment: 491-516 - Tilt: 47.5°
B - Segment: 530-559 - Tilt: 29.7°
B - Segment: 603-624 - Tilt: 31.6°
B - Segment: 631-652 - Tilt: 31.9°
B - Segment: 704-724 - Tilt: 30.4°
B - Segment: 793-812 - Tilt: 29.5°
Structural assessment:
MAIDEN score = -114.2819
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]