Structural insights into substrate recognition in proton dependent oligopeptide transporters
Organism: Shewanella oneidensis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4LEP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 14
Sequence positions:
A: 15-33|52-69|80-97|106-125|143-161|181-199|220-240|242-261|275-296|325-343|356-372|392-410|425-443|470-487
Tilt angles:
A - Segment: 15-33 - Tilt: 26.9°
A - Segment: 52-69 - Tilt: 20.4°
A - Segment: 80-97 - Tilt: 6.2°
A - Segment: 106-125 - Tilt: 26.8°
A - Segment: 143-161 - Tilt: 22.1°
A - Segment: 181-199 - Tilt: 18.8°
A - Segment: 220-240 - Tilt: 34.6°
A - Segment: 242-261 - Tilt: 29.3°
A - Segment: 275-296 - Tilt: 40.1°
A - Segment: 325-343 - Tilt: 32.1°
A - Segment: 356-372 - Tilt: 3.1°
A - Segment: 392-410 - Tilt: 40.0°
A - Segment: 425-443 - Tilt: 11.4°
A - Segment: 470-487 - Tilt: 21.5°
Structural assessment:
MAIDEN score = -82.1891
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]