Structural insights into substrate recognition in proton dependent oligopeptide transporters
Organism: Shewanella oneidensis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4LEP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 14
Sequence positions:
A: 6-25|45-63|71-88|98-117|134-152|174-191|202-223|228-248|255-277|301-319|324-339|361-379|387-404|433-451
Tilt angles:
A - Segment: 6-25 - Tilt: 19.0°
A - Segment: 45-63 - Tilt: 20.0°
A - Segment: 71-88 - Tilt: 3.3°
A - Segment: 98-117 - Tilt: 27.2°
A - Segment: 134-152 - Tilt: 19.3°
A - Segment: 174-191 - Tilt: 20.4°
A - Segment: 202-223 - Tilt: 35.9°
A - Segment: 228-248 - Tilt: 41.7°
A - Segment: 255-277 - Tilt: 38.8°
A - Segment: 301-319 - Tilt: 41.3°
A - Segment: 324-339 - Tilt: 16.7°
A - Segment: 361-379 - Tilt: 39.8°
A - Segment: 387-404 - Tilt: 15.6°
A - Segment: 433-451 - Tilt: 14.9°
Structural assessment:
MAIDEN score = -65.3875
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]