Bacterial sodium channel in high calcium, I222 space group
Organism: Alkalilimnicola ehrlichei
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4LTO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.2 Å
Number of TM segments = 8
Sequence positions:
A: 2-23|66-90
C: 278-298|342-366
B: 140-160|204-228
D: 416-436|480-504
Tilt angles:
A - Segment: 2-23 - Tilt: 20.7°
A - Segment: 66-90 - Tilt: 35.7°
C - Segment: 278-298 - Tilt: 13.9°
C - Segment: 342-366 - Tilt: 36.0°
B - Segment: 140-160 - Tilt: 13.7°
B - Segment: 204-228 - Tilt: 36.7°
D - Segment: 416-436 - Tilt: 14.5°
D - Segment: 480-504 - Tilt: 35.1°
Structural assessment:
MAIDEN score = -46.8837
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]