Reverse polarity of binding pocket suggests different function of a MOP superfamily transporter from Pyrococcus furiosus Vc1 (DSM3638)
Organism: Pyrococcus furiosus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01554
PDB ID: 4MLB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.5 Å
Number of TM segments = 16
Sequence positions:
A: 24-47|52-76|100-123|135-158|242-268|275-298|326-352|358-384
C: 25-46|52-75|100-127|135-158|167-191|193-219|327-351|355-377
Tilt angles:
A - Segment: 24-47 - Tilt: 18.6°
A - Segment: 52-76 - Tilt: 23.2°
A - Segment: 100-123 - Tilt: 5.9°
A - Segment: 135-158 - Tilt: 14.2°
A - Segment: 242-268 - Tilt: 31.7°
A - Segment: 275-298 - Tilt: 21.5°
A - Segment: 326-352 - Tilt: 20.9°
A - Segment: 358-384 - Tilt: 27.0°
C - Segment: 25-46 - Tilt: 7.8°
C - Segment: 52-75 - Tilt: 10.8°
C - Segment: 100-127 - Tilt: 26.7°
C - Segment: 135-158 - Tilt: 6.9°
C - Segment: 167-191 - Tilt: 14.7°
C - Segment: 193-219 - Tilt: 21.0°
C - Segment: 327-351 - Tilt: 5.5°
C - Segment: 355-377 - Tilt: 12.4°
Structural assessment:
MAIDEN score = -207.0117
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]