The resting-state conformation of the GLIC ligand-gated ion channel
Organism: Gloeobacter violaceus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02932
PDB ID: 4NPQ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 33.3 Å
Number of TM segments = 17
Sequence positions:
A: 197-218|221-243|254-275|291-314
C: 195-217|221-243|254-275
B: 196-218|221-243|254-276|291-314
E: 195-217|222-243|252-275
D: 194-217|222-243|252-275
Tilt angles:
A - Segment: 197-218 - Tilt: 12.1°
A - Segment: 221-243 - Tilt: 5.4°
A - Segment: 254-275 - Tilt: 17.7°
A - Segment: 291-314 - Tilt: 11.3°
C - Segment: 195-217 - Tilt: 23.0°
C - Segment: 221-243 - Tilt: 10.9°
C - Segment: 254-275 - Tilt: 23.2°
B - Segment: 196-218 - Tilt: 20.0°
B - Segment: 221-243 - Tilt: 8.8°
B - Segment: 254-276 - Tilt: 14.4°
B - Segment: 291-314 - Tilt: 11.4°
E - Segment: 195-217 - Tilt: 18.2°
E - Segment: 222-243 - Tilt: 9.6°
E - Segment: 252-275 - Tilt: 12.3°
D - Segment: 194-217 - Tilt: 17.3°
D - Segment: 222-243 - Tilt: 12.2°
D - Segment: 252-275 - Tilt: 13.8°
Structural assessment:
MAIDEN score = -384.9947
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]