Na⁺-translocating NADH: ubiquinone oxidoreductase from Vibrio cholerae
Organism: Vibrio cholerae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF03116
PDB ID: 4P6V
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.1 Å
Number of TM segments = 13
Sequence positions:
C: 8-29
B: 67-84|92-129|206-232|269-282|298-313|325-341
E: 6-25|42-60|116-130|138-153
D: 71-90
F: 9-27
Tilt angles:
C - Segment: 8-29 - Tilt: 49.2°
B - Segment: 67-84 - Tilt: 40.7°
B - Segment: 92-129 - Tilt: 36.7°
B - Segment: 206-232 - Tilt: 38.6°
B - Segment: 269-282 - Tilt: 14.9°
B - Segment: 298-313 - Tilt: 11.6°
B - Segment: 325-341 - Tilt: 11.7°
E - Segment: 6-25 - Tilt: 42.8°
E - Segment: 42-60 - Tilt: 32.8°
E - Segment: 116-130 - Tilt: 6.1°
E - Segment: 138-153 - Tilt: 31.2°
D - Segment: 71-90 - Tilt: 49.6°
F - Segment: 9-27 - Tilt: 39.7°
Structural assessment:
MAIDEN score = -34.9528
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]