Na⁺-translocating NADH: ubiquinone oxidoreductase from Vibrio cholerae
Organism: Vibrio cholerae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03116
PDB ID: 4P6V
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.6 Å
Number of TM segments = 12
Sequence positions:
C: 750-771
B: 429-447|455-490|562-599|601-622|641-659|662-679
E: 1217-1238|1247-1263
D: 1058-1078|1081-1102
F: 1372-1392
Tilt angles:
C - Segment: 750-771 - Tilt: 35.3°
B - Segment: 429-447 - Tilt: 24.1°
B - Segment: 455-490 - Tilt: 29.7°
B - Segment: 562-599 - Tilt: 27.7°
B - Segment: 601-622 - Tilt: 16.8°
B - Segment: 641-659 - Tilt: 9.1°
B - Segment: 662-679 - Tilt: 18.0°
E - Segment: 1217-1238 - Tilt: 32.5°
E - Segment: 1247-1263 - Tilt: 27.5°
D - Segment: 1058-1078 - Tilt: 39.5°
D - Segment: 1081-1102 - Tilt: 32.4°
F - Segment: 1372-1392 - Tilt: 30.3°
Structural assessment:
MAIDEN score = -62.6939
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]