GluN1a/GluN2B NMDA Receptor Ion Channel
Organism: Rattus norvegicus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4PE5
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 11
Sequence positions:
A: 514-532|556-575
C: 1982-2000|2007-2032|2196-2215
B: 1240-1255|1259-1287|1443-1459
D: 2713-2726|2730-2757|2925-2943
Tilt angles:
A - Segment: 514-532 - Tilt: 30.0°
A - Segment: 556-575 - Tilt: 35.4°
C - Segment: 1982-2000 - Tilt: 27.7°
C - Segment: 2007-2032 - Tilt: 28.2°
C - Segment: 2196-2215 - Tilt: 25.2°
B - Segment: 1240-1255 - Tilt: 23.8°
B - Segment: 1259-1287 - Tilt: 26.2°
B - Segment: 1443-1459 - Tilt: 37.1°
D - Segment: 2713-2726 - Tilt: 26.4°
D - Segment: 2730-2757 - Tilt: 25.5°
D - Segment: 2925-2943 - Tilt: 28.7°
Structural assessment:
MAIDEN score = -54.1509
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]