Particulate methane monooxygenase from Methylocystis sp. ATCC 49242 (ROCKWELL)
Organism: Methylocystis sp.
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02461
PDB ID: 4PHZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 36
Sequence positions:
A: 433-449|478-494
C: 2181-2198|2221-2238|2267-2285|2302-2320
B: 687-707|722-739|747-764|782-799|801-821|878-899
E: 1065-1082|1109-1126
G: 2394-2411|2435-2452|2480-2498|2517-2535
F: 1704-1726|1743-1760|1766-1784|1803-1819|1821-1837|1898-1919
I: 1453-1469|1497-1514
K: 48-65|88-104|134-152|169-187
J: 1951-1971|1987-2003|2011-2028|2046-2063|2065-2085|2142-2163
Tilt angles:
A - Segment: 433-449 - Tilt: 7.8°
A - Segment: 478-494 - Tilt: 8.9°
C - Segment: 2181-2198 - Tilt: 10.4°
C - Segment: 2221-2238 - Tilt: 17.8°
C - Segment: 2267-2285 - Tilt: 10.0°
C - Segment: 2302-2320 - Tilt: 8.0°
B - Segment: 687-707 - Tilt: 24.1°
B - Segment: 722-739 - Tilt: 17.5°
B - Segment: 747-764 - Tilt: 39.3°
B - Segment: 782-799 - Tilt: 35.6°
B - Segment: 801-821 - Tilt: 27.6°
B - Segment: 878-899 - Tilt: 43.1°
E - Segment: 1065-1082 - Tilt: 10.6°
E - Segment: 1109-1126 - Tilt: 11.0°
G - Segment: 2394-2411 - Tilt: 3.0°
G - Segment: 2435-2452 - Tilt: 16.6°
G - Segment: 2480-2498 - Tilt: 16.9°
G - Segment: 2517-2535 - Tilt: 4.8°
F - Segment: 1704-1726 - Tilt: 35.5°
F - Segment: 1743-1760 - Tilt: 20.0°
F - Segment: 1766-1784 - Tilt: 32.6°
F - Segment: 1803-1819 - Tilt: 33.3°
F - Segment: 1821-1837 - Tilt: 18.2°
F - Segment: 1898-1919 - Tilt: 42.7°
I - Segment: 1453-1469 - Tilt: 8.6°
I - Segment: 1497-1514 - Tilt: 13.1°
K - Segment: 48-65 - Tilt: 11.3°
K - Segment: 88-104 - Tilt: 14.0°
K - Segment: 134-152 - Tilt: 9.1°
K - Segment: 169-187 - Tilt: 7.9°
J - Segment: 1951-1971 - Tilt: 23.9°
J - Segment: 1987-2003 - Tilt: 16.6°
J - Segment: 2011-2028 - Tilt: 40.5°
J - Segment: 2046-2063 - Tilt: 37.0°
J - Segment: 2065-2085 - Tilt: 28.3°
J - Segment: 2142-2163 - Tilt: 41.8°
Structural assessment:
MAIDEN score = -169.3647
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]