Mouse serotonin 5-HT3 receptor
Organism: Mus musculus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 4PIR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.8 Å
Number of TM segments = 20
Sequence positions:
A: 224-239|241-256|277-294|358-375
C: 990-1005|1007-1021|1044-1061|1124-1141
B: 607-622|624-639|661-678|741-758
E: 1758-1773|1775-1790|1811-1829|1892-1909
D: 1374-1389|1391-1405|1428-1445|1508-1525
Tilt angles:
A - Segment: 224-239 - Tilt: 16.9°
A - Segment: 241-256 - Tilt: 14.4°
A - Segment: 277-294 - Tilt: 17.4°
A - Segment: 358-375 - Tilt: 27.8°
C - Segment: 990-1005 - Tilt: 14.7°
C - Segment: 1007-1021 - Tilt: 10.2°
C - Segment: 1044-1061 - Tilt: 19.7°
C - Segment: 1124-1141 - Tilt: 25.7°
B - Segment: 607-622 - Tilt: 15.1°
B - Segment: 624-639 - Tilt: 14.5°
B - Segment: 661-678 - Tilt: 20.0°
B - Segment: 741-758 - Tilt: 25.6°
E - Segment: 1758-1773 - Tilt: 17.5°
E - Segment: 1775-1790 - Tilt: 12.5°
E - Segment: 1811-1829 - Tilt: 16.2°
E - Segment: 1892-1909 - Tilt: 28.4°
D - Segment: 1374-1389 - Tilt: 17.1°
D - Segment: 1391-1405 - Tilt: 10.1°
D - Segment: 1428-1445 - Tilt: 21.3°
D - Segment: 1508-1525 - Tilt: 27.4°
Structural assessment:
MAIDEN score = -193.7635
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]