T.elongatus Photosystem II, rows of dimers crystal packing
Organism: Thermosynechococcus elongatus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00421
PDB ID: 4PJ0
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.7 Å
Number of TM segments = 72
Sequence positions:
A: 19-38|103-119|132-147|184-203|263-280
C: 865-880|926-942|973-988|1049-1064|1085-1099|1241-1256
B: 352-368|429-444|471-487|532-547|569-584|786-801
E: 1646-1662
D: 1307-1324|1386-1401|1416-1432|1469-1487|1544-1559
F: 1717-1734
I: 1810-1826
H: 1770-1786
K: 1881-1898
J: 1844-1859
M: 1952-1967
L: 1922-1937
R: 5125-5139
T: 2222-2237
Y: 2481-2496
X: 2517-2533
Z: 2548-2566|2587-2602
a: 2625-2645|2711-2726|2738-2752|2792-2810|2870-2885
c: 3469-3485|3532-3547|3577-3592|3655-3670|3689-3704|3846-3863
b: 2959-2975|3035-3051|3078-3095|3139-3154|3176-3191|3393-3408
e: 4247-4263
d: 3912-3929|3991-4007|4021-4037|4074-4092|4149-4164
f: 4318-4336
i: 4412-4429
h: 4372-4387
k: 4484-4501
j: 4446-4462
m: 4555-4570
l: 4525-4540
r: 5158-5173
t: 4826-4842
y: 5190-5205
x: 5092-5108
z: 5221-5239|5257-5273
Tilt angles:
A - Segment: 19-38 - Tilt: 29.7°
A - Segment: 103-119 - Tilt: 21.2°
A - Segment: 132-147 - Tilt: 11.2°
A - Segment: 184-203 - Tilt: 34.3°
A - Segment: 263-280 - Tilt: 29.2°
C - Segment: 865-880 - Tilt: 16.2°
C - Segment: 926-942 - Tilt: 16.7°
C - Segment: 973-988 - Tilt: 12.8°
C - Segment: 1049-1064 - Tilt: 4.7°
C - Segment: 1085-1099 - Tilt: 1.4°
C - Segment: 1241-1256 - Tilt: 18.4°
B - Segment: 352-368 - Tilt: 19.8°
B - Segment: 429-444 - Tilt: 9.6°
B - Segment: 471-487 - Tilt: 27.6°
B - Segment: 532-547 - Tilt: 1.3°
B - Segment: 569-584 - Tilt: 4.8°
B - Segment: 786-801 - Tilt: 14.6°
E - Segment: 1646-1662 - Tilt: 20.4°
D - Segment: 1307-1324 - Tilt: 38.7°
D - Segment: 1386-1401 - Tilt: 18.7°
D - Segment: 1416-1432 - Tilt: 18.7°
D - Segment: 1469-1487 - Tilt: 38.4°
D - Segment: 1544-1559 - Tilt: 23.0°
F - Segment: 1717-1734 - Tilt: 39.0°
I - Segment: 1810-1826 - Tilt: 25.5°
H - Segment: 1770-1786 - Tilt: 26.0°
K - Segment: 1881-1898 - Tilt: 32.9°
J - Segment: 1844-1859 - Tilt: 12.8°
M - Segment: 1952-1967 - Tilt: 2.1°
L - Segment: 1922-1937 - Tilt: 5.8°
R - Segment: 5125-5139 - Tilt: 13.3°
T - Segment: 2222-2237 - Tilt: 20.4°
Y - Segment: 2481-2496 - Tilt: 13.7°
X - Segment: 2517-2533 - Tilt: 20.6°
Z - Segment: 2548-2566 - Tilt: 41.8°
Z - Segment: 2587-2602 - Tilt: 10.5°
a - Segment: 2625-2645 - Tilt: 24.0°
a - Segment: 2711-2726 - Tilt: 20.1°
a - Segment: 2738-2752 - Tilt: 3.0°
a - Segment: 2792-2810 - Tilt: 39.4°
a - Segment: 2870-2885 - Tilt: 20.3°
c - Segment: 3469-3485 - Tilt: 14.4°
c - Segment: 3532-3547 - Tilt: 11.4°
c - Segment: 3577-3592 - Tilt: 18.2°
c - Segment: 3655-3670 - Tilt: 9.5°
c - Segment: 3689-3704 - Tilt: 8.4°
c - Segment: 3846-3863 - Tilt: 24.2°
b - Segment: 2959-2975 - Tilt: 19.2°
b - Segment: 3035-3051 - Tilt: 16.8°
b - Segment: 3078-3095 - Tilt: 28.2°
b - Segment: 3139-3154 - Tilt: 1.3°
b - Segment: 3176-3191 - Tilt: 3.8°
b - Segment: 3393-3408 - Tilt: 14.7°
e - Segment: 4247-4263 - Tilt: 16.6°
d - Segment: 3912-3929 - Tilt: 37.9°
d - Segment: 3991-4007 - Tilt: 14.9°
d - Segment: 4021-4037 - Tilt: 19.3°
d - Segment: 4074-4092 - Tilt: 39.6°
d - Segment: 4149-4164 - Tilt: 23.8°
f - Segment: 4318-4336 - Tilt: 31.7°
i - Segment: 4412-4429 - Tilt: 32.9°
h - Segment: 4372-4387 - Tilt: 19.9°
k - Segment: 4484-4501 - Tilt: 31.7°
j - Segment: 4446-4462 - Tilt: 17.3°
m - Segment: 4555-4570 - Tilt: 1.7°
l - Segment: 4525-4540 - Tilt: 6.0°
r - Segment: 5158-5173 - Tilt: 10.5°
t - Segment: 4826-4842 - Tilt: 25.1°
y - Segment: 5190-5205 - Tilt: 13.6°
x - Segment: 5092-5108 - Tilt: 21.6°
z - Segment: 5221-5239 - Tilt: 35.4°
z - Segment: 5257-5273 - Tilt: 19.0°
Structural assessment:
MAIDEN score = -324.2730
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]