E. coli Peptide Transporter YbgH
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4Q65
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.5 Å
Number of TM segments = 11
Sequence positions:
A: 11-30|51-69|75-94|104-122|139-158|170-188|208-231|233-253|255-288|382-402|413-431
Tilt angles:
A - Segment: 11-30 - Tilt: 18.9°
A - Segment: 51-69 - Tilt: 19.9°
A - Segment: 75-94 - Tilt: 11.8°
A - Segment: 104-122 - Tilt: 30.6°
A - Segment: 139-158 - Tilt: 13.9°
A - Segment: 170-188 - Tilt: 18.6°
A - Segment: 208-231 - Tilt: 26.6°
A - Segment: 233-253 - Tilt: 29.0°
A - Segment: 255-288 - Tilt: 41.7°
A - Segment: 382-402 - Tilt: 35.9°
A - Segment: 413-431 - Tilt: 7.7°
Structural assessment:
MAIDEN score = -82.9044
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]