H. walsbyi bacteriorhodopsin
Organism: Haloquadratum walsbyi
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 4QI1
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 21
Sequence positions:
A: 16-32|55-73|86-99|121-136|140-156|186-207|209-226
C: 16-33|54-73|86-99|121-136|140-156|186-207|209-226
B: 16-32|55-73|86-99|121-136|139-155|186-207|209-226
Tilt angles:
A - Segment: 16-32 - Tilt: 30.1°
A - Segment: 55-73 - Tilt: 16.6°
A - Segment: 86-99 - Tilt: 8.6°
A - Segment: 121-136 - Tilt: 7.6°
A - Segment: 140-156 - Tilt: 18.2°
A - Segment: 186-207 - Tilt: 12.3°
A - Segment: 209-226 - Tilt: 16.2°
C - Segment: 16-33 - Tilt: 25.7°
C - Segment: 54-73 - Tilt: 21.6°
C - Segment: 86-99 - Tilt: 8.4°
C - Segment: 121-136 - Tilt: 8.1°
C - Segment: 140-156 - Tilt: 19.3°
C - Segment: 186-207 - Tilt: 12.1°
C - Segment: 209-226 - Tilt: 17.6°
B - Segment: 16-32 - Tilt: 31.3°
B - Segment: 55-73 - Tilt: 17.4°
B - Segment: 86-99 - Tilt: 8.8°
B - Segment: 121-136 - Tilt: 8.4°
B - Segment: 139-155 - Tilt: 5.4°
B - Segment: 186-207 - Tilt: 12.9°
B - Segment: 209-226 - Tilt: 17.1°
Structural assessment:
MAIDEN score = -166.4908
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]