H. walsbyi bacteriorhodopsin
Organism: Haloquadratum walsbyi
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 4QI1
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 21
Sequence positions:
A: 11-24|42-55|79-91|109-121|134-147|174-186|204-218
C: 468-481|498-510|535-547|565-577|590-603|630-642|660-674
B: 240-252|270-283|307-319|337-349|362-375|402-414|432-446
Tilt angles:
A - Segment: 11-24 - Tilt: 10.8°
A - Segment: 42-55 - Tilt: 12.2°
A - Segment: 79-91 - Tilt: 14.8°
A - Segment: 109-121 - Tilt: 4.1°
A - Segment: 134-147 - Tilt: 26.3°
A - Segment: 174-186 - Tilt: 11.1°
A - Segment: 204-218 - Tilt: 18.2°
C - Segment: 468-481 - Tilt: 27.0°
C - Segment: 498-510 - Tilt: 9.5°
C - Segment: 535-547 - Tilt: 15.1°
C - Segment: 565-577 - Tilt: 3.2°
C - Segment: 590-603 - Tilt: 27.1°
C - Segment: 630-642 - Tilt: 12.0°
C - Segment: 660-674 - Tilt: 18.5°
B - Segment: 240-252 - Tilt: 19.9°
B - Segment: 270-283 - Tilt: 11.5°
B - Segment: 307-319 - Tilt: 14.0°
B - Segment: 337-349 - Tilt: 2.7°
B - Segment: 362-375 - Tilt: 26.5°
B - Segment: 402-414 - Tilt: 11.4°
B - Segment: 432-446 - Tilt: 19.1°
Structural assessment:
MAIDEN score = -91.3866
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]