Structure and Function of Neisseria gonorrhoeae MtrF Illuminates a Class of Antimetabolite Efflux Pumps
Organism: Neisseria gonorrhoeae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03806
PDB ID: 4R1I
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.0 Å
Number of TM segments = 22
Sequence positions:
A: 14-34|69-98|174-196|202-219|268-283|301-317|345-363|378-401|403-423|425-442|483-502
B: 520-540|575-604|679-702|708-726|773-789|807-825|851-869|887-907|909-929|933-948|989-1008
Tilt angles:
A - Segment: 14-34 - Tilt: 25.0°
A - Segment: 69-98 - Tilt: 52.6°
A - Segment: 174-196 - Tilt: 30.0°
A - Segment: 202-219 - Tilt: 42.3°
A - Segment: 268-283 - Tilt: 11.3°
A - Segment: 301-317 - Tilt: 19.4°
A - Segment: 345-363 - Tilt: 31.5°
A - Segment: 378-401 - Tilt: 27.2°
A - Segment: 403-423 - Tilt: 20.8°
A - Segment: 425-442 - Tilt: 11.8°
A - Segment: 483-502 - Tilt: 14.4°
B - Segment: 520-540 - Tilt: 27.0°
B - Segment: 575-604 - Tilt: 53.7°
B - Segment: 679-702 - Tilt: 33.8°
B - Segment: 708-726 - Tilt: 39.3°
B - Segment: 773-789 - Tilt: 15.1°
B - Segment: 807-825 - Tilt: 21.4°
B - Segment: 851-869 - Tilt: 33.3°
B - Segment: 887-907 - Tilt: 32.6°
B - Segment: 909-929 - Tilt: 18.4°
B - Segment: 933-948 - Tilt: 4.8°
B - Segment: 989-1008 - Tilt: 14.9°
Structural assessment:
MAIDEN score = -118.8447
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]