Bacterial Zn-transporter ZnuD from Neisseria meningitidis (flexible conformation bound to a zinc ion)
Organism: Neisseria meningitidis
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF00593
PDB ID: 4RDT
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 19.8 Å
Number of TM segments = 24
Sequence positions:
A: 45-78|100-109|112-125|127-136|183-196|198-214|226-237|305-315|327-336|354-363|369-378|406-413|419-425|462-468|477-483|519-524|534-540|579-584|598-603|636-642|658-663|675-681|702-711|720-726
Tilt angles:
A - Segment: 45-78 - Tilt: 32.8°
A - Segment: 100-109 - Tilt: 16.9°
A - Segment: 112-125 - Tilt: 35.5°
A - Segment: 127-136 - Tilt: 44.0°
A - Segment: 183-196 - Tilt: 61.0°
A - Segment: 198-214 - Tilt: 66.5°
A - Segment: 226-237 - Tilt: 58.8°
A - Segment: 305-315 - Tilt: 57.2°
A - Segment: 327-336 - Tilt: 54.6°
A - Segment: 354-363 - Tilt: 54.6°
A - Segment: 369-378 - Tilt: 51.5°
A - Segment: 406-413 - Tilt: 46.1°
A - Segment: 419-425 - Tilt: 37.4°
A - Segment: 462-468 - Tilt: 31.9°
A - Segment: 477-483 - Tilt: 29.2°
A - Segment: 519-524 - Tilt: 22.7°
A - Segment: 534-540 - Tilt: 17.1°
A - Segment: 579-584 - Tilt: 19.7°
A - Segment: 598-603 - Tilt: 15.1°
A - Segment: 636-642 - Tilt: 22.5°
A - Segment: 658-663 - Tilt: 11.8°
A - Segment: 675-681 - Tilt: 20.0°
A - Segment: 702-711 - Tilt: 24.8°
A - Segment: 720-726 - Tilt: 17.0°
Structural assessment:
MAIDEN score = 58.1546
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]