Bacterial Zn-transporter ZnuD from Neisseria meningitidis (flexible conformation bound to a zinc ion)
Organism: Neisseria meningitidis
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF00593
PDB ID: 4RDT
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 22
Sequence positions:
A: 23-73|82-90|161-175|188-197|206-215|259-266|279-286|305-312|323-330|355-361|373-379|387-393|408-414|443-450|464-470|494-501|516-523|535-542|558-567|575-583|601-614|621-630
Tilt angles:
A - Segment: 23-73 - Tilt: 37.7°
A - Segment: 82-90 - Tilt: 14.0°
A - Segment: 161-175 - Tilt: 67.7°
A - Segment: 188-197 - Tilt: 58.1°
A - Segment: 206-215 - Tilt: 46.4°
A - Segment: 259-266 - Tilt: 41.8°
A - Segment: 279-286 - Tilt: 37.5°
A - Segment: 305-312 - Tilt: 33.3°
A - Segment: 323-330 - Tilt: 27.0°
A - Segment: 355-361 - Tilt: 23.6°
A - Segment: 373-379 - Tilt: 25.8°
A - Segment: 387-393 - Tilt: 27.7°
A - Segment: 408-414 - Tilt: 26.5°
A - Segment: 443-450 - Tilt: 28.9°
A - Segment: 464-470 - Tilt: 30.8°
A - Segment: 494-501 - Tilt: 35.4°
A - Segment: 516-523 - Tilt: 36.9°
A - Segment: 535-542 - Tilt: 26.4°
A - Segment: 558-567 - Tilt: 41.7°
A - Segment: 575-583 - Tilt: 39.5°
A - Segment: 601-614 - Tilt: 49.0°
A - Segment: 621-630 - Tilt: 38.0°
Structural assessment:
MAIDEN score = 598.6007
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]