COG4313 outer membrane channel from Pseudomonas putida F1
Organism: Pseudomonas putida
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF13557
PDB ID: 4RL8
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 12
Sequence positions:
A: 16-23|46-52|64-71|90-96|112-118|134-141|156-163|177-186|198-208|219-231|237-249|255-265
Tilt angles:
A - Segment: 16-23 - Tilt: 44.3°
A - Segment: 46-52 - Tilt: 33.9°
A - Segment: 64-71 - Tilt: 21.6°
A - Segment: 90-96 - Tilt: 15.5°
A - Segment: 112-118 - Tilt: 23.5°
A - Segment: 134-141 - Tilt: 27.0°
A - Segment: 156-163 - Tilt: 41.8°
A - Segment: 177-186 - Tilt: 46.3°
A - Segment: 198-208 - Tilt: 53.7°
A - Segment: 219-231 - Tilt: 58.2°
A - Segment: 237-249 - Tilt: 59.6°
A - Segment: 255-265 - Tilt: 54.1°
Structural assessment:
MAIDEN score = 363.2018
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]