GluN1/GluN2B NMDA receptor, structure 2
Organism: Xenopus laevis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4TLM
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.0 Å
Number of TM segments = 12
Sequence positions:
A: 556-579|613-638|803-824
C: 555-578|616-638|803-823
B: 549-569|609-631|801-825
D: 543-569|609-631|801-824
Tilt angles:
A - Segment: 556-579 - Tilt: 28.5°
A - Segment: 613-638 - Tilt: 20.8°
A - Segment: 803-824 - Tilt: 31.5°
C - Segment: 555-578 - Tilt: 31.5°
C - Segment: 616-638 - Tilt: 32.5°
C - Segment: 803-823 - Tilt: 30.4°
B - Segment: 549-569 - Tilt: 29.1°
B - Segment: 609-631 - Tilt: 27.4°
B - Segment: 801-825 - Tilt: 38.5°
D - Segment: 543-569 - Tilt: 36.4°
D - Segment: 609-631 - Tilt: 26.7°
D - Segment: 801-824 - Tilt: 37.0°
Structural assessment:
MAIDEN score = -154.0447
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]