GluN1/GluN2B NMDA receptor, structure 2
Organism: Xenopus laevis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4TLM
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 32.0 Å
Number of TM segments = 12
Sequence positions:
A: 531-557|579-605|763-787
C: 2044-2067|2092-2118|2272-2293
B: 1296-1318|1344-1366|1517-1542
D: 2779-2805|2833-2856|3020-3044
Tilt angles:
A - Segment: 531-557 - Tilt: 35.4°
A - Segment: 579-605 - Tilt: 14.4°
A - Segment: 763-787 - Tilt: 33.5°
C - Segment: 2044-2067 - Tilt: 29.2°
C - Segment: 2092-2118 - Tilt: 11.0°
C - Segment: 2272-2293 - Tilt: 24.2°
B - Segment: 1296-1318 - Tilt: 26.7°
B - Segment: 1344-1366 - Tilt: 28.2°
B - Segment: 1517-1542 - Tilt: 34.0°
D - Segment: 2779-2805 - Tilt: 35.1°
D - Segment: 2833-2856 - Tilt: 21.1°
D - Segment: 3020-3044 - Tilt: 31.2°
Structural assessment:
MAIDEN score = -78.9903
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]