Full-length AMPA subtype ionotropic glutamate receptor GluA2 in complex with partial agonist kainate
Organism: Rattus norvegicus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4U2Q
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 9
Sequence positions:
A: 477-506|512-540|693-718
C: 2179-2208
B: 1215-1249|1252-1282|1437-1461
D: 2714-2744|2748-2775
Tilt angles:
A - Segment: 477-506 - Tilt: 20.3°
A - Segment: 512-540 - Tilt: 16.2°
A - Segment: 693-718 - Tilt: 20.6°
C - Segment: 2179-2208 - Tilt: 35.4°
B - Segment: 1215-1249 - Tilt: 39.3°
B - Segment: 1252-1282 - Tilt: 30.9°
B - Segment: 1437-1461 - Tilt: 17.4°
D - Segment: 2714-2744 - Tilt: 29.9°
D - Segment: 2748-2775 - Tilt: 19.1°
Structural assessment:
MAIDEN score = -108.4690
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]