GluA2* in complex with partial agonist (S)-5-Nitrowillardiine
Organism: Rattus norvegicus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4U4F
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 12
Sequence positions:
A: 504-535|537-582|738-766
C: 2040-2071|2073-2118|2274-2300
B: 1271-1303|1308-1350|1506-1532
D: 2808-2839|2844-2886|3043-3069
Tilt angles:
A - Segment: 504-535 - Tilt: 31.7°
A - Segment: 537-582 - Tilt: 28.6°
A - Segment: 738-766 - Tilt: 27.9°
C - Segment: 2040-2071 - Tilt: 35.1°
C - Segment: 2073-2118 - Tilt: 30.4°
C - Segment: 2274-2300 - Tilt: 25.8°
B - Segment: 1271-1303 - Tilt: 35.3°
B - Segment: 1308-1350 - Tilt: 24.7°
B - Segment: 1506-1532 - Tilt: 24.1°
D - Segment: 2808-2839 - Tilt: 32.9°
D - Segment: 2844-2886 - Tilt: 24.2°
D - Segment: 3043-3069 - Tilt: 20.0°
Structural assessment:
MAIDEN score = -178.9967
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]