Cryo-EM density map of GluA2em in complex with ZK200775
Organism: Rattus norvegicus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4UQJ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 39.0 Å
Number of TM segments = 12
Sequence positions:
A: 489-520|526-569|719-741
C: 1981-2013|2018-2061|2211-2233
B: 1235-1266|1272-1315|1465-1487
D: 2727-2758|2763-2806|2956-2979
Tilt angles:
A - Segment: 489-520 - Tilt: 35.5°
A - Segment: 526-569 - Tilt: 28.1°
A - Segment: 719-741 - Tilt: 20.7°
C - Segment: 1981-2013 - Tilt: 34.5°
C - Segment: 2018-2061 - Tilt: 30.0°
C - Segment: 2211-2233 - Tilt: 21.1°
B - Segment: 1235-1266 - Tilt: 37.0°
B - Segment: 1272-1315 - Tilt: 27.3°
B - Segment: 1465-1487 - Tilt: 20.9°
D - Segment: 2727-2758 - Tilt: 31.8°
D - Segment: 2763-2806 - Tilt: 30.2°
D - Segment: 2956-2979 - Tilt: 19.9°
Structural assessment:
MAIDEN score = -158.7908
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]