Idle mammalian ribosome-Sec61 complex
Organism: Sus scrofa
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 4W25
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.4 Å
Number of TM segments = 11
Sequence positions:
1: 6464-6478|6496-6512|6535-6550|6559-6573|6584-6600|6651-6665|6694-6712|6743-6758|6806-6824|6826-6841
2: 6879-6898
Tilt angles:
1 - Segment: 6464-6478 - Tilt: 21.5°
1 - Segment: 6496-6512 - Tilt: 38.5°
1 - Segment: 6535-6550 - Tilt: 8.3°
1 - Segment: 6559-6573 - Tilt: 29.8°
1 - Segment: 6584-6600 - Tilt: 26.7°
1 - Segment: 6651-6665 - Tilt: 14.6°
1 - Segment: 6694-6712 - Tilt: 42.6°
1 - Segment: 6743-6758 - Tilt: 22.8°
1 - Segment: 6806-6824 - Tilt: 31.3°
1 - Segment: 6826-6841 - Tilt: 26.7°
2 - Segment: 6879-6898 - Tilt: 41.6°
Structural assessment:
MAIDEN score = -78.1694
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]