Peptide transporter from Yersinia enterocolitica at 3 Å resolution
Organism: Yersinia enterocolitica
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4W6V
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 32.0 Å
Number of TM segments = 14
Sequence positions:
A: 18-39|58-80|83-106|113-134|152-173|180-201|223-241|248-274|283-310|327-349|351-372|387-412|423-443|456-477
Tilt angles:
A - Segment: 18-39 - Tilt: 27.0°
A - Segment: 58-80 - Tilt: 21.1°
A - Segment: 83-106 - Tilt: 22.8°
A - Segment: 113-134 - Tilt: 23.7°
A - Segment: 152-173 - Tilt: 21.1°
A - Segment: 180-201 - Tilt: 5.5°
A - Segment: 223-241 - Tilt: 11.3°
A - Segment: 248-274 - Tilt: 35.8°
A - Segment: 283-310 - Tilt: 42.1°
A - Segment: 327-349 - Tilt: 30.2°
A - Segment: 351-372 - Tilt: 8.5°
A - Segment: 387-412 - Tilt: 38.6°
A - Segment: 423-443 - Tilt: 21.6°
A - Segment: 456-477 - Tilt: 15.0°
Structural assessment:
MAIDEN score = -111.7379
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]