Alpha 1 glycine receptor transmembrane structure fused to the extracellular domain of GLIC
Organism: Gloeobacter violaceus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 4X5T
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.4 Å
Number of TM segments = 15
Sequence positions:
A: 190-213|215-242|244-268
C: 806-829|832-856|861-884
B: 498-521|524-549|552-576
E: 1422-1441|1444-1469|1472-1496
D: 1114-1137|1140-1164|1169-1192
Tilt angles:
A - Segment: 190-213 - Tilt: 15.2°
A - Segment: 215-242 - Tilt: 21.0°
A - Segment: 244-268 - Tilt: 9.4°
C - Segment: 806-829 - Tilt: 15.4°
C - Segment: 832-856 - Tilt: 13.5°
C - Segment: 861-884 - Tilt: 10.8°
B - Segment: 498-521 - Tilt: 15.2°
B - Segment: 524-549 - Tilt: 18.0°
B - Segment: 552-576 - Tilt: 7.8°
E - Segment: 1422-1441 - Tilt: 21.2°
E - Segment: 1444-1469 - Tilt: 16.7°
E - Segment: 1472-1496 - Tilt: 8.9°
D - Segment: 1114-1137 - Tilt: 16.9°
D - Segment: 1140-1164 - Tilt: 14.1°
D - Segment: 1169-1192 - Tilt: 11.8°
Structural assessment:
MAIDEN score = -178.3265
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]