An archaeal mechanosensitive channel in expanded state
Organism: Methanosarcina acetivorans
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01741
PDB ID: 4Y7J
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.4 Å
Number of TM segments = 8
Sequence positions:
A: 16-39|41-89
C: 491-517|528-544
E: 956-975|1001-1021
D: 725-744|772-789
Tilt angles:
A - Segment: 16-39 - Tilt: 60.4°
A - Segment: 41-89 - Tilt: 31.2°
C - Segment: 491-517 - Tilt: 70.8°
C - Segment: 528-544 - Tilt: 47.7°
E - Segment: 956-975 - Tilt: 48.1°
E - Segment: 1001-1021 - Tilt: 52.8°
D - Segment: 725-744 - Tilt: 51.9°
D - Segment: 772-789 - Tilt: 46.9°
Structural assessment:
MAIDEN score = -76.3327
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]