An archaeal mechanosensitive channel in closed state
Organism: Methanosarcina acetivorans
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01741
PDB ID: 4Y7K
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 33.0 Å
Number of TM segments = 10
Sequence positions:
A: 14-44|65-88
C: 505-535|555-579
B: 264-293|314-339
E: 989-1019|1039-1063
D: 747-777|797-821
Tilt angles:
A - Segment: 14-44 - Tilt: 40.8°
A - Segment: 65-88 - Tilt: 27.4°
C - Segment: 505-535 - Tilt: 42.0°
C - Segment: 555-579 - Tilt: 31.0°
B - Segment: 264-293 - Tilt: 44.3°
B - Segment: 314-339 - Tilt: 35.0°
E - Segment: 989-1019 - Tilt: 41.0°
E - Segment: 1039-1063 - Tilt: 30.0°
D - Segment: 747-777 - Tilt: 41.3°
D - Segment: 797-821 - Tilt: 30.1°
Structural assessment:
MAIDEN score = -111.6375
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]