Sodium-dependent citrate symporter SeCitS form Salmonella enterica
Organism: Salmonella enterica
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03390
PDB ID: 5A1S
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.2 Å
Number of TM segments = 20
Sequence positions:
C: 11-31|34-58|66-87|94-118|128-177|200-216|248-269|272-300|307-338|340-361|399-421
D: 432-455|528-546|550-572|626-648|680-699|713-731|738-758|777-828|834-852
Tilt angles:
C - Segment: 11-31 - Tilt: 19.0°
C - Segment: 34-58 - Tilt: 35.2°
C - Segment: 66-87 - Tilt: 36.9°
C - Segment: 94-118 - Tilt: 46.5°
C - Segment: 128-177 - Tilt: 26.5°
C - Segment: 200-216 - Tilt: 19.2°
C - Segment: 248-269 - Tilt: 50.0°
C - Segment: 272-300 - Tilt: 28.5°
C - Segment: 307-338 - Tilt: 58.2°
C - Segment: 340-361 - Tilt: 35.2°
C - Segment: 399-421 - Tilt: 41.1°
D - Segment: 432-455 - Tilt: 36.4°
D - Segment: 528-546 - Tilt: 42.5°
D - Segment: 550-572 - Tilt: 40.7°
D - Segment: 626-648 - Tilt: 41.1°
D - Segment: 680-699 - Tilt: 35.8°
D - Segment: 713-731 - Tilt: 17.5°
D - Segment: 738-758 - Tilt: 33.7°
D - Segment: 777-828 - Tilt: 7.2°
D - Segment: 834-852 - Tilt: 19.6°
Structural assessment:
MAIDEN score = -140.3717
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]