Nitrate transporter NRT1.1 from Arabidopsis thaliana
Organism: Arabidopsis thaliana
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00854
PDB ID: 5A2N
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 24
Sequence positions:
A: 39-56|70-82|106-119|146-161|192-206|220-234|349-362|385-402|424-436|467-479|507-524|544-557
B: 39-53|71-84|105-118|146-161|192-205|221-234|348-361|385-402|422-435|468-480|506-521|546-559
Tilt angles:
A - Segment: 39-56 - Tilt: 49.4°
A - Segment: 70-82 - Tilt: 19.7°
A - Segment: 106-119 - Tilt: 25.3°
A - Segment: 146-161 - Tilt: 35.5°
A - Segment: 192-206 - Tilt: 28.0°
A - Segment: 220-234 - Tilt: 32.7°
A - Segment: 349-362 - Tilt: 20.0°
A - Segment: 385-402 - Tilt: 50.8°
A - Segment: 424-436 - Tilt: 4.4°
A - Segment: 467-479 - Tilt: 11.4°
A - Segment: 507-524 - Tilt: 52.5°
A - Segment: 544-557 - Tilt: 32.4°
B - Segment: 39-53 - Tilt: 47.3°
B - Segment: 71-84 - Tilt: 20.4°
B - Segment: 105-118 - Tilt: 17.8°
B - Segment: 146-161 - Tilt: 33.5°
B - Segment: 192-205 - Tilt: 35.7°
B - Segment: 221-234 - Tilt: 35.0°
B - Segment: 348-361 - Tilt: 35.3°
B - Segment: 385-402 - Tilt: 51.0°
B - Segment: 422-435 - Tilt: 25.5°
B - Segment: 468-480 - Tilt: 12.1°
B - Segment: 506-521 - Tilt: 34.9°
B - Segment: 546-559 - Tilt: 11.1°
Structural assessment:
MAIDEN score = -139.6008
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]