Nitrate transporter NRT1.1 from Arabidopsis thaliana
Organism: Arabidopsis thaliana
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 5A2N
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.9 Å
Number of TM segments = 22
Sequence positions:
A: 11-36|48-69|80-102|104-134|146-171|179-200|248-268|365-384|396-421|441-464
B: 485-510|515-535|551-571|574-596|624-645|647-669|723-743|755-775|799-819|828-847|871-893|907-925
Tilt angles:
A - Segment: 11-36 - Tilt: 47.1°
A - Segment: 48-69 - Tilt: 28.4°
A - Segment: 80-102 - Tilt: 28.3°
A - Segment: 104-134 - Tilt: 52.1°
A - Segment: 146-171 - Tilt: 38.5°
A - Segment: 179-200 - Tilt: 29.9°
A - Segment: 248-268 - Tilt: 25.1°
A - Segment: 365-384 - Tilt: 4.2°
A - Segment: 396-421 - Tilt: 44.3°
A - Segment: 441-464 - Tilt: 33.9°
B - Segment: 485-510 - Tilt: 41.1°
B - Segment: 515-535 - Tilt: 15.4°
B - Segment: 551-571 - Tilt: 1.7°
B - Segment: 574-596 - Tilt: 29.8°
B - Segment: 624-645 - Tilt: 24.3°
B - Segment: 647-669 - Tilt: 29.8°
B - Segment: 723-743 - Tilt: 26.3°
B - Segment: 755-775 - Tilt: 19.9°
B - Segment: 799-819 - Tilt: 11.0°
B - Segment: 828-847 - Tilt: 14.1°
B - Segment: 871-893 - Tilt: 35.6°
B - Segment: 907-925 - Tilt: 10.4°
Structural assessment:
MAIDEN score = -172.0568
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]