Native mammalian ribosome-bound Sec61 protein-conducting channel in the 'non-inserting' state
Organism: Canis lupus familiaris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 5A6U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 10
Sequence positions:
A: 32-58|76-97|110-127|155-173|175-196|241-258|285-302|358-380
B: 66-84
G: 36-54
Tilt angles:
A - Segment: 32-58 - Tilt: 56.3°
A - Segment: 76-97 - Tilt: 51.3°
A - Segment: 110-127 - Tilt: 19.7°
A - Segment: 155-173 - Tilt: 24.1°
A - Segment: 175-196 - Tilt: 38.6°
A - Segment: 241-258 - Tilt: 21.4°
A - Segment: 285-302 - Tilt: 24.3°
A - Segment: 358-380 - Tilt: 46.2°
B - Segment: 66-84 - Tilt: 21.6°
G - Segment: 36-54 - Tilt: 35.6°
Structural assessment:
MAIDEN score = -60.1550
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]