Native mammalian ribosome-bound Sec61 protein-conducting channel in the 'non-inserting' state
Organism: Canis lupus familiaris
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 5A6U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 7-21|42-56|79-91|107-121|128-141|197-208|239-253|291-305|351-363|366-380
B: 406-418
G: 462-476
Tilt angles:
A - Segment: 7-21 - Tilt: 24.7°
A - Segment: 42-56 - Tilt: 43.3°
A - Segment: 79-91 - Tilt: 17.2°
A - Segment: 107-121 - Tilt: 33.5°
A - Segment: 128-141 - Tilt: 22.7°
A - Segment: 197-208 - Tilt: 12.8°
A - Segment: 239-253 - Tilt: 42.1°
A - Segment: 291-305 - Tilt: 39.1°
A - Segment: 351-363 - Tilt: 26.5°
A - Segment: 366-380 - Tilt: 41.1°
B - Segment: 406-418 - Tilt: 14.0°
G - Segment: 462-476 - Tilt: 41.8°
Structural assessment:
MAIDEN score = -75.1542
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]