Rabbit TRPV2 ion channel
Organism: Oryctolagus cuniculus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF06011
PDB ID: 5AN8
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 24
Sequence positions:
A: 310-327|334-352|376-394|398-415|442-460|494-513
C: 1482-1499|1506-1524|1548-1566|1568-1587|1614-1632|1666-1685
B: 896-913|920-938|962-980|984-1001|1028-1046|1080-1099
D: 2068-2085|2092-2110|2134-2152|2154-2172|2200-2218|2252-2271
Tilt angles:
A - Segment: 310-327 - Tilt: 12.3°
A - Segment: 334-352 - Tilt: 31.0°
A - Segment: 376-394 - Tilt: 25.4°
A - Segment: 398-415 - Tilt: 35.9°
A - Segment: 442-460 - Tilt: 32.6°
A - Segment: 494-513 - Tilt: 36.7°
C - Segment: 1482-1499 - Tilt: 12.0°
C - Segment: 1506-1524 - Tilt: 31.2°
C - Segment: 1548-1566 - Tilt: 26.2°
C - Segment: 1568-1587 - Tilt: 37.3°
C - Segment: 1614-1632 - Tilt: 31.9°
C - Segment: 1666-1685 - Tilt: 36.1°
B - Segment: 896-913 - Tilt: 11.4°
B - Segment: 920-938 - Tilt: 31.9°
B - Segment: 962-980 - Tilt: 25.1°
B - Segment: 984-1001 - Tilt: 35.0°
B - Segment: 1028-1046 - Tilt: 32.0°
B - Segment: 1080-1099 - Tilt: 36.0°
D - Segment: 2068-2085 - Tilt: 11.1°
D - Segment: 2092-2110 - Tilt: 32.1°
D - Segment: 2134-2152 - Tilt: 26.0°
D - Segment: 2154-2172 - Tilt: 36.6°
D - Segment: 2200-2218 - Tilt: 31.3°
D - Segment: 2252-2271 - Tilt: 35.3°
Structural assessment:
MAIDEN score = -187.7320
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]