Sodium proton antiporter napa in inward-facing conformation
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00999
PDB ID: 5BZ2
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 11
Sequence positions:
A: 6-27|29-43|55-73|88-105|117-131|152-166|181-199|261-278|291-312|325-341|353-367
Tilt angles:
A - Segment: 6-27 - Tilt: 49.1°
A - Segment: 29-43 - Tilt: 28.9°
A - Segment: 55-73 - Tilt: 33.3°
A - Segment: 88-105 - Tilt: 39.2°
A - Segment: 117-131 - Tilt: 23.7°
A - Segment: 152-166 - Tilt: 16.7°
A - Segment: 181-199 - Tilt: 29.3°
A - Segment: 261-278 - Tilt: 41.8°
A - Segment: 291-312 - Tilt: 50.3°
A - Segment: 325-341 - Tilt: 40.7°
A - Segment: 353-367 - Tilt: 14.1°
Structural assessment:
MAIDEN score = -70.3383
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]