Sodium proton antiporter napa in inward-facing conformation
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00999
PDB ID: 5BZ2
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 11
Sequence positions:
A: 4-25|27-41|53-70|86-104|114-128|150-166|176-194|258-278|288-306|326-339|350-365
Tilt angles:
A - Segment: 4-25 - Tilt: 47.8°
A - Segment: 27-41 - Tilt: 22.9°
A - Segment: 53-70 - Tilt: 33.9°
A - Segment: 86-104 - Tilt: 31.1°
A - Segment: 114-128 - Tilt: 32.4°
A - Segment: 150-166 - Tilt: 13.6°
A - Segment: 176-194 - Tilt: 30.8°
A - Segment: 258-278 - Tilt: 41.6°
A - Segment: 288-306 - Tilt: 40.1°
A - Segment: 326-339 - Tilt: 30.8°
A - Segment: 350-365 - Tilt: 9.7°
Structural assessment:
MAIDEN score = -48.6657
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]