Sodium proton antiporter napa in outward-facing conformation
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00999
PDB ID: 5BZ3
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.3 Å
Number of TM segments = 10
Sequence positions:
A: 27-49|51-70|82-100|118-132|146-161|179-197|259-280|292-311|319-333|354-369
Tilt angles:
A - Segment: 27-49 - Tilt: 31.3°
A - Segment: 51-70 - Tilt: 33.7°
A - Segment: 82-100 - Tilt: 39.1°
A - Segment: 118-132 - Tilt: 38.0°
A - Segment: 146-161 - Tilt: 10.3°
A - Segment: 179-197 - Tilt: 28.3°
A - Segment: 259-280 - Tilt: 49.3°
A - Segment: 292-311 - Tilt: 36.7°
A - Segment: 319-333 - Tilt: 21.7°
A - Segment: 354-369 - Tilt: 5.5°
Structural assessment:
MAIDEN score = -24.3298
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]