A YidC-like protein in the archaeal plasma membrane
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02096
PDB ID: 5C8J
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.3 Å
Number of TM segments = 3
Sequence positions:
I: 12-38|103-122|136-150
Tilt angles:
I - Segment: 12-38 - Tilt: 29.8°
I - Segment: 103-122 - Tilt: 34.0°
I - Segment: 136-150 - Tilt: 33.4°
Structural assessment:
MAIDEN score = -27.1585
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]