Peptide-Bound State of Thermus thermophilus SecYEG
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 5CH4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.6 Å
Number of TM segments = 14
Sequence positions:
Y: 21-35|71-98|110-124|158-173|182-201|218-235|262-277|312-326|358-378|392-407
E: 425-438|451-480
G: 488-507|536-550
Tilt angles:
Y - Segment: 21-35 - Tilt: 29.7°
Y - Segment: 71-98 - Tilt: 60.7°
Y - Segment: 110-124 - Tilt: 30.6°
Y - Segment: 158-173 - Tilt: 29.7°
Y - Segment: 182-201 - Tilt: 50.0°
Y - Segment: 218-235 - Tilt: 47.9°
Y - Segment: 262-277 - Tilt: 39.7°
Y - Segment: 312-326 - Tilt: 25.5°
Y - Segment: 358-378 - Tilt: 48.2°
Y - Segment: 392-407 - Tilt: 18.2°
E - Segment: 425-438 - Tilt: 51.2°
E - Segment: 451-480 - Tilt: 62.5°
G - Segment: 488-507 - Tilt: 47.9°
G - Segment: 536-550 - Tilt: 21.5°
Structural assessment:
MAIDEN score = -53.5242
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]