ATP synthase from Paracoccus denitrificans
Organism: Paracoccus denitrificans
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 5DN6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.8 Å
Number of TM segments = 14
Sequence positions:
K: 4-23
J: 4-23
M: 4-23
L: 4-23
O: 4-23
N: 4-23
Q: 4-23
P: 4-23
S: 4-23
R: 4-23
U: 4-23
T: 4-23
Y: 1003-1023|1030-1051
Tilt angles:
K - Segment: 4-23 - Tilt: 5.3°
J - Segment: 4-23 - Tilt: 5.6°
M - Segment: 4-23 - Tilt: 3.9°
L - Segment: 4-23 - Tilt: 4.4°
O - Segment: 4-23 - Tilt: 2.8°
N - Segment: 4-23 - Tilt: 2.6°
Q - Segment: 4-23 - Tilt: 2.6°
P - Segment: 4-23 - Tilt: 3.0°
S - Segment: 4-23 - Tilt: 4.0°
R - Segment: 4-23 - Tilt: 3.3°
U - Segment: 4-23 - Tilt: 5.6°
T - Segment: 4-23 - Tilt: 5.0°
Y - Segment: 1003-1023 - Tilt: 17.2°
Y - Segment: 1030-1051 - Tilt: 16.8°
Structural assessment:
MAIDEN score = -17.4775
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]