ATP synthase from Paracoccus denitrificans
Organism: Paracoccus denitrificans
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 5DN6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 33.6 Å
Number of TM segments = 19
Sequence positions:
K: 3467-3487
J: 3393-3413
M: 3615-3636
L: 3541-3561
O: 3765-3785|3805-3827
N: 3690-3711|3732-3755
Q: 3914-3934|3952-3973
P: 3839-3860|3878-3899
S: 4061-4082|4102-4123
R: 3988-4008|4027-4048
U: 4207-4229
T: 4134-4155|4177-4199
Tilt angles:
K - Segment: 3467-3487 - Tilt: 13.4°
J - Segment: 3393-3413 - Tilt: 13.2°
M - Segment: 3615-3636 - Tilt: 9.2°
L - Segment: 3541-3561 - Tilt: 13.1°
O - Segment: 3765-3785 - Tilt: 12.5°
O - Segment: 3805-3827 - Tilt: 14.8°
N - Segment: 3690-3711 - Tilt: 8.7°
N - Segment: 3732-3755 - Tilt: 11.4°
Q - Segment: 3914-3934 - Tilt: 9.6°
Q - Segment: 3952-3973 - Tilt: 13.9°
P - Segment: 3839-3860 - Tilt: 9.7°
P - Segment: 3878-3899 - Tilt: 16.4°
S - Segment: 4061-4082 - Tilt: 11.2°
S - Segment: 4102-4123 - Tilt: 10.1°
R - Segment: 3988-4008 - Tilt: 12.6°
R - Segment: 4027-4048 - Tilt: 7.6°
U - Segment: 4207-4229 - Tilt: 11.0°
T - Segment: 4134-4155 - Tilt: 7.4°
T - Segment: 4177-4199 - Tilt: 2.8°
Structural assessment:
MAIDEN score = -113.8717
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]