Human Nav1.7-VSD4-NavAb in complex with GX-936
Organism: Arcobacter butzleri
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00520
PDB ID: 5EK0
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.0 Å
Number of TM segments = 24
Sequence positions:
A: 1506-1523|1536-1555|1567-1584|1600-1616|1633-1653|1697-1716
C: 1506-1523|1536-1555|1567-1584|1600-1616|1633-1651|1698-1716
B: 1506-1523|1538-1556|1567-1584|1601-1616|1633-1651|1698-1716
D: 1508-1524|1536-1553|1569-1585|1600-1616|1633-1651|1698-1716
Tilt angles:
A - Segment: 1506-1523 - Tilt: 25.5°
A - Segment: 1536-1555 - Tilt: 30.1°
A - Segment: 1567-1584 - Tilt: 21.5°
A - Segment: 1600-1616 - Tilt: 33.0°
A - Segment: 1633-1653 - Tilt: 36.3°
A - Segment: 1697-1716 - Tilt: 38.5°
C - Segment: 1506-1523 - Tilt: 26.1°
C - Segment: 1536-1555 - Tilt: 31.8°
C - Segment: 1567-1584 - Tilt: 17.3°
C - Segment: 1600-1616 - Tilt: 26.9°
C - Segment: 1633-1651 - Tilt: 28.2°
C - Segment: 1698-1716 - Tilt: 36.6°
B - Segment: 1506-1523 - Tilt: 25.6°
B - Segment: 1538-1556 - Tilt: 25.0°
B - Segment: 1567-1584 - Tilt: 18.6°
B - Segment: 1601-1616 - Tilt: 32.8°
B - Segment: 1633-1651 - Tilt: 29.3°
B - Segment: 1698-1716 - Tilt: 39.5°
D - Segment: 1508-1524 - Tilt: 14.6°
D - Segment: 1536-1553 - Tilt: 26.0°
D - Segment: 1569-1585 - Tilt: 5.7°
D - Segment: 1600-1616 - Tilt: 31.3°
D - Segment: 1633-1651 - Tilt: 29.1°
D - Segment: 1698-1716 - Tilt: 37.7°
Structural assessment:
MAIDEN score = -309.1096
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]